Installation | Load from PDF | Load from JSON | Load from non-PDF document | Batch Processing | Paper Components | Info | Bibliography | Cross-References | Batch | Search Text | Pattern | Return | Regex matches | Expand Text | Large Language Models | Option 1: Run a model locally with Ollama (recommended) | Option 2: Use a cloud API | LLM Queries | Expand JSON | Rate Limiting | Repository Functions | OSF Links and IDs | OSF Info | Download OSF Files | GitHub, ResearchBox, and Zenodo | Local files | Modules | Module List | Running modules | Creating modules | Reports

Module List | Module Output | Traffic light | Table | Summary Table | Report | Paper | Previous Outputs | Built-in Modules | all_p_values | all_urls | stat_p_exact | marginal | stat_check | Chaining Modules

Roxygen Documentation | Title | Description | Details | Validation | Keywords | Author | References | Import | Parameters | Returns | Examples | Function Code | Code Helpers | Progress Bars | Get Previous Outputs | Table | Summary Table | Traffic Light | Summary Text | Report | Scroll Tables | Collapsible Sections | Plurals | HTML Links | Format References | Return

Convert PDFs | Using Bibr | Using Grobid | Read in converted files | Paper Objects | Paper ID | Authors | Info | Bibliography | Cross References | Text | Section | Text Search | Pattern | Chaining | Regex | Match