Installation | Load from PDF | Load from JSON | Load from non-PDF document | Batch Processing | Paper Components | Info | Bibliography | Cross-References | Batch | Search Text | Pattern | Return | Regex matches | Expand Text | Large Language Models | Option 1: Run a model locally with Ollama (recommended) | Option 2: Use a cloud API | LLM Queries | Expand JSON | Rate Limiting | Repository Functions | OSF Links and IDs | OSF Info | Download OSF Files | GitHub, ResearchBox, and Zenodo | Local files | Modules | Module List | Running modules | Creating modules | Reports
Package: metacheck 0.1.0
Lisa DeBruine
metacheck: Check Research Outputs for Best Practices
A modular, extendable system for checking research outputs for best practices using text search, R code, and/or (optional) LLM queries.
Authors:
metacheck_0.1.0.tar.gz
metacheck_0.1.0.zip(r-4.7)metacheck_0.1.0.zip(r-4.6)metacheck_0.1.0.zip(r-4.5)
metacheck_0.1.0.tgz(r-4.6-any)metacheck_0.1.0.tgz(r-4.5-any)
metacheck_0.1.0.tar.gz(r-4.7-any)metacheck_0.1.0.tar.gz(r-4.6-any)
metacheck_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
metacheck/json (API)
| # Install 'metacheck' in R: |
| install.packages('metacheck', repos = c('https://scienceverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/scienceverse/metacheck/issues
Pkgdown/docs site:https://scienceverse.github.io
Last updated from:32659a9b9e. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 212 | ||
| source / vignettes | OK | 314 | ||
| linux-release-x86_64 | ERROR | 241 | ||
| macos-release-arm64 | ERROR | 214 | ||
| macos-oldrel-arm64 | ERROR | 177 | ||
| windows-devel | ERROR | 179 | ||
| windows-release | ERROR | 168 | ||
| windows-oldrel | ERROR | 152 | ||
| wasm-release | OK | 185 |
Exports:.aspredicted_info.bibtype_convert.github_config.grobid_to_bibr.is_paper.is_paper_list.llm_model_list_groq.llm_ollama_native.osf_file_data.osf_headers.osf_info.osf_node_data.osf_parent_project.osf_pat_validate.osf_preprint_data.osf_reg_data.osf_user_data.paper_coerce.paper_schema.rbox_info.read_bibr.xml_find_text.xml_find1_text.xml_read_grobid.xml2bib.zenodo_info%||%accuracyadd_bib_matchaspredicted_infoaspredicted_linkscausal_relationscheck_orcidcode_abs_pathcode_extract_rcode_file_refscode_langcode_library_linescode_line_statscode_parse_rcode_readcode_remove_commentscollapse_sectionconvertconvert_bibrconvert_grobidcredit_rolescrossref_doicrossref_querydatacite_doidemofiledemopaperdoi_cleandoi_lookupdoi_resolvesdoi_valid_formatemailexpand_textextract_eqextract_p_valuesextract_urlsfig_image_viewfile_categoryfiletypeFLoRAFLoRA_dateFLoRA_updateformat_bib_authorsformat_refget_orcidget_prev_outputsgithub_filesgithub_infogithub_languagesgithub_linksgithub_readmegithub_repogrobid_to_bibrjson_expandlastloglinkllmllm_max_callsllm_modelllm_model_listllm_uselocal_filesloggerlogpathmessagemodule_helpmodule_infomodule_listmodule_reportmodule_runmodule_templateonlineopenalex_doiopenalex_queryorcid_personosf_api_checkosf_check_idosf_delayosf_file_downloadosf_get_all_pagesosf_infoosf_linksosf_preprint_listosf_typepaperpaper_idpaper_tablepaper_validatepaper_writepaperlistpath_sanitizepbpluralpubpeer_commentsrbox_file_downloadrbox_inforbox_linksreadref_tablerep_ifreportreport_appreport_module_runreport_qmdreport_tableretractionwatchrwrw_daterw_updatescroll_tablesearch_textstatstest_papertext_expandtext_searchvalidateverbosezenodo_file_downloadzenodo_infozenodo_links
Dependencies:askpassbackportsbase64encbibtexbitbit64brewbslibcachemcallrclicliprcommonmarkcorocpp11crayoncrosstalkcurldescdigestdplyrDTellmerevaluatefarverfastmapfontawesomefsgenericsggplot2gitcredsgluegtablehighrhmshtmltoolshtmlwidgetshttrhttr2isobandjaneaustenrjpegjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixmemoisemimeopensslotelpillarpkgbuildpkgconfigpkgloadplyrprettyunitsprocessxprogresspromisespspurrrquartoR6rappdirsRColorBrewerRcppreadrrlangrmarkdownroxygen2rprojrootrstudioapirvestS7sassscalesselectrSnowballCstatcheckstringistringrsystibbletidyrtidyselecttidytexttinytextokenizerstzdbutf8vctrsviridisLitevroomwithrxfunxml2yaml
metacheck
Last update: 2026-06-16
Started: 2025-11-03
Modules
Module List | Module Output | Traffic light | Table | Summary Table | Report | Paper | Previous Outputs | Built-in Modules | all_p_values | all_urls | stat_p_exact | marginal | stat_check | Chaining Modules
Last update: 2026-06-16
Started: 2025-02-04
Creating Modules
Roxygen Documentation | Title | Description | Details | Validation | Keywords | Author | References | Import | Parameters | Returns | Examples | Function Code | Code Helpers | Progress Bars | Get Previous Outputs | Table | Summary Table | Traffic Light | Summary Text | Report | Scroll Tables | Collapsible Sections | Plurals | HTML Links | Format References | Return
Last update: 2026-06-15
Started: 2025-03-01
Batch Processing
Convert PDFs | Using Bibr | Using Grobid | Read in converted files | Paper Objects | Paper ID | Authors | Info | Bibliography | Cross References | Text | Section | Text Search | Pattern | Chaining | Regex | Match
Last update: 2026-05-24
Started: 2025-02-07
